Arizona State University East, Aeronautical Management Technology - Campus at the former Williams AFB (E of Chandler, SE of Phoenix) offers programs in Airway Science Management and Airway Science Flight Management (see the site to learn the difference), both of which include options for pilot ratings through 737 type certification.
Auburn University (AL) Aviation Management - Information about business-oriented Aviation Management program, which also includes opportunities for earning pilot's license and advanced ratings.
Embry-Riddle Aeronautical University - Principal campuses in Daytona Beach, FL and Prescott, AZ, plus over 100 "Extended Campus" centers worldwide. Programs address scientific, engineering, and business aspects of aerospace. Site has extensive information on degree, graduate, and certificate programs, admissions, etc.
Georgia Institute of Technology The - School of Aerospace Engineering - Daniel Guggenheim School of Aerospace Engineering - The School of Aerospace Engineering prepares students at the Bachelor's, Master's, and Doctoral levels for a career in vehicle engineering, with primary emphasis on flight vehicles.
Illinois, University of - Institute of Aviation has two year (non-degree) professional pilot curriculum. Graduates may transfer to any degree program. Site has standard information on curriculum, etc.
San Jose State University (CA) - Offers BS in Aviation Maintenance and Aviation Operations; the latter includes options in Flight Operations, Operations Management, and Administration (the last two specially accredited by the FAA). Site provides standard information on curriculum, campus, schedule, etc.
UND Aerospace - UND Aerospace is the popular name applied to the John D. Odegard School School of Aerospace Sciences at the University of North Dakota offering undergraduate and graduate degrees.
Virginia Tech Department of Aerospace and Ocean Engineering - The Department of Aerospace and Ocean Engineering is a unique blend of two disciplines that takes advantage of commonality in the analysis and design of aerospace and ocean vehicles. Undergraduate and graduate degrees are offered in both disciplines. The Department has 19 faculty working in aero/hydrodynamics, structural mechanics, dynamics and control and multidisciplinary design optimization.